Scaffold Ga0208644_1017962

Overview

Basic Information

• Taxon OID: 3300025889
• Scaffold ID: Ga0208644_1017962
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4544
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009459	Metagenome	317	Y
F022875	Metagenome	212	N
F042875	Metagenome	157	N
F048912	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_101796211	F048912	N/A	MRNYNYDSWLTEFLDYEDDDGLTDEEREELKDLYEAWVIDQYEQTLD
Ga0208644_10179622	F042875	N/A	MTNNDQTDSFMFDLDNLIRRYQQEFDLNDQTIVGALEFAKLTVLTDAEIIFSMEDIDEDDDLEDLISPNF
Ga0208644_10179628	F022875	N/A	MNLTEEIKENIRVRAKAHINSTDPSTDHWDSIETPDGFVDFNIWQDDDYRGGEWIVTCYDTYHSTDDGCVHTDTSTFKRLAL
Ga0208644_10179629	F009459	N/A	MSREITLEPTIMIEELMFWIHQNEMGGDCIDPSNRFFPLYLELQKLLDHEQQKKYDLYVSVKNDEVKL