Scaffold Ga0208644

Basic Information
Taxon OID	3300025889 Open in IMG/M
Scaffold ID	Ga0208644_1016850 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208644_1016850 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4736
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4736

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (36.36%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002528	Metagenome / Metatranscriptome	551	Y
F005945	Metagenome	385	Y
F006685	Metagenome	367	N
F009001	Metagenome	324	Y
F048960	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_101685011	F006685	N/A	MTKQTRGPTWRMREWGRTAYRNRQAKLRMDGESSQTESAKRLLRVMAPRLGKRVDDFMYTFGGNTEHTTPLFLTFVLDMCPYQIASMALQTLLDNLQFNLPVGRMAYKIGKAFENQARWDKAMEEMHPHKKDLLVLDDRSKAMKLKQFYDYEEERFTLWDSKCKAGLGAWLLEEIRIETGVWEIGFASGQKGHKPERLCVPSGSYTDWVKRFDAWKETTRVFKMALPDEPVDWYELIGGGYSLKHMPPQEFFTGKPMSWFKEHKRSYEHAFSAVNKLQKVSWKINKEILEI
Ga0208644_10168502	F005945	GGA	MLAMNINDQTDTFQYELAKLIYRFKSEYDINDYTIAGCLDFAKLSVLTETDDVIFTGELTEDTDEEEDTDNTDETFPHF
Ga0208644_10168503	F002528	GAGG	MKKKTPTTPTKHSPTSDEANAPNAPASTAALKELPIIKIVSEEEEMHVNMELEMEDKTHDMLVKWGKEAATDEDYVRIAIDAGIREAVKALDNKQK
Ga0208644_10168505	F048960	N/A	MKVINRIPTPSDMIDKEVDKLFNTKLNNFLGYAFPVICCIGWLLILLAIFSS
Ga0208644_10168506	F009001	N/A	MSVTIYLTDHNGRKVAFFYRIDSERYLTCPQLIWACRNHPEYQGTAESKEHFIEQAKGVIKELSRSLPKRKKCKECDNDLHLRENESNLCDTCNPITN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208644_1016850

Overview

Ecosystem & Geography

Associated Families

Sequences