Scaffold Ga0208644_1011477

Overview

Basic Information

• Taxon OID: 3300025889
• Scaffold ID: Ga0208644_1011477
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6008
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001396	Metagenome / Metatranscriptome	705	Y
F004761	Metagenome / Metatranscriptome	424	Y
F072123	Metagenome / Metatranscriptome	121	N
F104779	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_101147710	F004761	AGCAGG	MTMSLADVRTTVRDISDLDATDIPNSIIDNAVKEAFQRIVALERRYPKYQESYTFNTVANQRAYTLSAIGDIREIISLVETSSSGSRLTMIPYDNAEEIWLGNTDTASRPYFYAIWDGALHLYPKPDAVYNITVRAYRNPVYTWLSNTNEAIDLDEWFHVLLAYFALARVYQRQEDPELSQMYMRSFEE
Ga0208644_10114772	F072123	AGGA	MLKVTCEDCSTEFYAPELPRRGAICFKCHVSSLRFGFTYGKDNFHGPTIKERQDKQIADAKAGGLDPQPIGSRWI
Ga0208644_10114773	F001396	GGA	MPEVWVPIVVAVITGPVVVVLSKLRKENSEQHAEGRELLQSIGAKVDKVGSKLDKHIGWHEGKEDK
Ga0208644_10114779	F104779	AGGA	MKNAILSHEYHGVPVSGIRPAAEVAGSRLAAGSGPYLGRGNFCAANDDTCEGRKAKGTDYCMGHLRSRGDV