NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208644_1010614

Scaffold Ga0208644_1010614


Overview

Basic Information
Taxon OID3300025889 Open in IMG/M
Scaffold IDGa0208644_1010614 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6309
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035746Metagenome171N
F045721Metagenome152N
F046366Metagenome / Metatranscriptome151N
F073495Metagenome120N
F100944Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208644_101061411F073495AGGAGGMGERWQFMGIQTLTEYAFKLRWCFAENQLRFDDLMLDGEPANDEDLTSRQFAEIIGHLKEYRYELL
Ga0208644_101061413F100944AGGAMSQFRIQRTRKAPVPATQKARTNTWQDLFDSMNKGHWFLVQERNLCKVKAAAFKHVKGKYRLYKHPTRKDCHVFMIKEK
Ga0208644_101061416F046366GAGGMNSATQTVIMHISNDQDYYNDVQEIFERCGDSYDTCIELKEMVDNIMFPEADIQAQNMDLFFRQDIIMDALSQVNWREVYETLAEAV
Ga0208644_101061417F035746GAGGMAKQHEHDFAKLRHVATKYYRETNCCTVVAVAAAARVGFGKAYHAMKREGRRDKRGAYFTQYKRALAGLGYDIVPVDINMGKTLATAKKRCPKKGTFLVNTRGHVTCIRDGEMVDWAADNNSRKRILWVHQVIKRED
Ga0208644_10106149F045721GGAGMAVEVNISKDNADYYVEAYTKDYHLDENKVVRETGTTRLCYVAGYRDYELEETEQISVLLRLRDDIKDFYSGYPDGEVTVKLVIKEDYVNA
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Institute for Fundamental Biomedical Research
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