NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208644_1010568

Scaffold Ga0208644_1010568


Overview

Basic Information
Taxon OID3300025889 Open in IMG/M
Scaffold IDGa0208644_1010568 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6326
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (43.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002564Metagenome / Metatranscriptome547Y
F006785Metagenome / Metatranscriptome364Y
F055671Metagenome138Y
F068609Metagenome / Metatranscriptome124Y
F073486Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0208644_101056813F002564GAGGMALTISHGTNLVEYHESTPLTAVNDALEVHADSSEFTFAATVTGGANFTLAFETNFNGGATWYELDTSKTINSNGQYIYFYTGKPCNKIRMRVASISSGTPSIVAHIGVAYHG
Ga0208644_10105682F006785GGAMTGGEWTARGRQKEAREAEREQLRLEKRHLRDLRWAVERSSIEASDWADLLALQQAHGKEGPLQLWRELVPYWRSCQLLNGGADIPPELFPQATGLFPRASQAVKAPANRVKASPGSPRKKRIDAGCAQPSRKRSS
Ga0208644_10105684F068609N/AMALIRTTEPHGTFRVTYETVTAESAEHGDATERGWLDWRGCPVDQYDDSCWDFRDLTDRLAGCYAEGDGATVPSWITLDPQSDFWLSPFWRDIAGEDALSVTASVHRPDWITDSSWIRVCRMLGWRSYC
Ga0208644_10105685F073486AGGMTDNTFHWTGTHVSGSRACAVVRYSGPTASGRGSRWLATIKRDADTTWRGSATFEEGPIIAALRAAGKAGVEWQALTCHSIDADTYAVGF
Ga0208644_10105688F055671N/AMQSRLLTLAAVLTACGVLAMGADNAAQLQRCESAGRSAAECRLVVLGR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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