Basic Information | |
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Taxon OID | 3300025889 Open in IMG/M |
Scaffold ID | Ga0208644_1010568 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6326 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (43.75%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002564 | Metagenome / Metatranscriptome | 547 | Y |
F006785 | Metagenome / Metatranscriptome | 364 | Y |
F055671 | Metagenome | 138 | Y |
F068609 | Metagenome / Metatranscriptome | 124 | Y |
F073486 | Metagenome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208644_101056813 | F002564 | GAGG | MALTISHGTNLVEYHESTPLTAVNDALEVHADSSEFTFAATVTGGANFTLAFETNFNGGATWYELDTSKTINSNGQYIYFYTGKPCNKIRMRVASISSGTPSIVAHIGVAYHG |
Ga0208644_10105682 | F006785 | GGA | MTGGEWTARGRQKEAREAEREQLRLEKRHLRDLRWAVERSSIEASDWADLLALQQAHGKEGPLQLWRELVPYWRSCQLLNGGADIPPELFPQATGLFPRASQAVKAPANRVKASPGSPRKKRIDAGCAQPSRKRSS |
Ga0208644_10105684 | F068609 | N/A | MALIRTTEPHGTFRVTYETVTAESAEHGDATERGWLDWRGCPVDQYDDSCWDFRDLTDRLAGCYAEGDGATVPSWITLDPQSDFWLSPFWRDIAGEDALSVTASVHRPDWITDSSWIRVCRMLGWRSYC |
Ga0208644_10105685 | F073486 | AGG | MTDNTFHWTGTHVSGSRACAVVRYSGPTASGRGSRWLATIKRDADTTWRGSATFEEGPIIAALRAAGKAGVEWQALTCHSIDADTYAVGF |
Ga0208644_10105688 | F055671 | N/A | MQSRLLTLAAVLTACGVLAMGADNAAQLQRCESAGRSAAECRLVVLGR |
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