Scaffold Ga0208644_1008480

Overview

Basic Information

• Taxon OID: 3300025889
• Scaffold ID: Ga0208644_1008480
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7242
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022191	Metagenome	215	N
F034162	Metagenome	175	Y
F042315	Metagenome	158	N
F084179	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_10084801	F022191	GGAGG	VGQWAGTVGAMADGIKTDGSHGRTTYSPQKLVNDLAVATLEGRGLGLKKHHRLGYVTEEDKRLFQRIVGITVEEFNQRLIGKLDNLADRIVDRMLDTVEDTPLNSLGFNLAVAIDKRQRLAGLNATQGANVNIQVNNYGSLSKEEIVARLSGKAPVPTIQAAPVELPNPNDIDVKKPVPVNVTG
Ga0208644_100848011	F042315	AGGTGG	LKKQKRYPRNWNLEHRPSNKWQQVLVARKDKNDRNVKRNAKTLPDLSPTELYEAIDEGYHYFWNKRGRIPPNYNAIRWAKA
Ga0208644_100848015	F034162	N/A	LPVAANMPVEVELAGGGTERRDGVTGDWRHVVRWRTVVDTEPVKRKKKV
Ga0208644_10084802	F084179	AGTAG	MWPEGGEGIVGKVCRNKQYNELRVMGEKGELWTKVGNWQFTGGLVRGERVLVNRVWVSGDDTDAEYEVVRRMDVNEEVPQVPTVVEQPLVEPSTVSELETPVAILPQFQREEPDYPRKQESADDYIARIRAEAAKWANGQGR