Scaffold Ga0208644_1005190

Overview

Basic Information

• Taxon OID: 3300025889
• Scaffold ID: Ga0208644_1005190
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9653
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (37.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028149	Metagenome / Metatranscriptome	192	N
F063494	Metagenome / Metatranscriptome	129	N
F083941	Metagenome / Metatranscriptome	112	N
F085631	Metagenome / Metatranscriptome	111	Y
F090287	Metagenome / Metatranscriptome	108	Y
F097235	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_100519010	F097235	AGGA	MYGQMMGKRKMDGMGRMGPEVETVEFTPPKELKLEGDSGTAMVDWRITPRGTVEIIGFDGITLGESGRQDMEEDAVENEMDDMEEEA
Ga0208644_100519011	F028149	AGGAG	MAAGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGMIGYYNTGSFDAYSGTTHTFDRFNSVFPNVTGSWENPTGASCTGQPCDPTENKIGWGWTRNTYSLEKQSWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAAELSSSLLGGNAFACAAGLPPINFSWVGAGYTTLRVTDNAAVAIAAASLGKLTPEILQSRVTRQYFLGAIQAGKDGYDSLQLHTDKDTFRYLSKTNATLYDAWRFGVFAPAAKEFYKYGFMGYVGDFMVKVLQFPLRFNATATPGNYTLVLPYKNVAATEGIKSVFNEDYDRAQYQISYINNPRALRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVDRGCVEIIPVCEADPGNPAQSYNSADPVCGVTVQFTAVPNDAGNYVIGSTGILCDDNIVTNAGISEATPAALVAALQTVWDAEFGTASGTWSVVSGNLIQLAGSALGTTTEVVPCTNVTLEFAI
Ga0208644_100519012	F085631	N/A	MKNTIRVSYRLPIEVAQMLEEEAIRSRRTKTAVLIIAIEDHVMRSAAKKPVDTRKTR
Ga0208644_100519015	F063494	N/A	MIDAPLPTPATLTQMLTQESPKHLSPEATYRFYERLGILAGNKPATPEQLQASLLEANEYDLNSEA
Ga0208644_10051905	F083941	GGA	MLENPNNLEVRIVRLETIIGDKDAGMVSDIHGIKATLEGLKQFQWKLFGGLGVLVVLAQLIGRIGLK
Ga0208644_10051909	F090287	AGGAGG	MPALTAQQIAALSGCFDCLSPGIKETYMVTLLQQIQGSLPYASFTTTSPGGLLTVTATAAANPARKKFTLQNQKNEVLYVKFGTGASATDYHIQLQEHNAGSKHSQPFILDGYVGAISVAPATGNPSYTFAEFV