NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208644_1004425

Scaffold Ga0208644_1004425


Overview

Basic Information
Taxon OID3300025889 Open in IMG/M
Scaffold IDGa0208644_1004425 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10606
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009600Metagenome315Y
F011218Metagenome / Metatranscriptome293N
F015723Metagenome / Metatranscriptome252Y
F033779Metagenome / Metatranscriptome176Y
F079994Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0208644_100442510F079994N/AMEHLTQRLEQLKQQESALIMQLDELRVLIQAYQNTLENDKGVG
Ga0208644_10044252F015723N/AMAKIVSITPKGQWQDLFKLEIRFDNGDFGTAFAKSPTPSYNVGDEVDYTKNEKGTIKINKPFGGGFSGGNGGSFANTSKVSGDERSASIIRQVALKAAVEYACAAGHDVNTILANAATFNEWMTGNQSTATHQEHFATRNESPF
Ga0208644_10044254F009600N/AMRVPATGHLKSYHVVVGKVPSLNMFYASKHWTVRAKAKEKHTAEVLEQLSHYDCVPIQHVYITCKVNYRYDIDNSIMAVKFALDAFRKWGGVKDDSKAYVRKLKMEHDPDIHPDTAEITFQGLLVDQS
Ga0208644_10044255F011218N/AMQYYTNPAKRRKIDFLLAECASLFANCDSTYQARQEAKYKEQSILAEIAKIDYHFAIQCGFLQQDI
Ga0208644_10044257F033779N/AMRPNQLATLTILTSVLLAAVSGCNSAKPILESVIVKDTVIVTETKYLIDTLEVMKDTVIYQDKVRVQLQYVDRKVVVEAACEPDTIRVVQTKVVTKQEPKTNKWTLESCLGALAFILTFGYLIKRWIDKLTE
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