Scaffold Ga0208644

Basic Information
Taxon OID	3300025889 Open in IMG/M
Scaffold ID	Ga0208644_1003908 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11388
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004112	Metagenome / Metatranscriptome	452	Y
F010155	Metagenome / Metatranscriptome	307	Y
F011844	Metagenome / Metatranscriptome	286	Y
F093875	Metagenome	106	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

452

Metagenome / Metatranscriptome

307

Metagenome / Metatranscriptome

286

Metagenome

106

Protein ID	Family	RBS	Sequence
Ga0208644_100390813	F093875	N/A	MPIPEHNIKAIRKGDTWTWTLEFYEDECEETPINVSDYEFKLMAKNSSGTTQFTWANADFVEGATTNSRSVTLSAVTTATYPVGEFVYDLQVTTDSGVYTWMAGYVSVENQVTS
Ga0208644_10039086	F010155	N/A	MLDCANNVRAIYVALLNGNITYNGKNVPVYGETPFSTMPQNYVIIGDINEISDNTNHSFGNDVEVTIDIFSEQYRKYELSIVDSIASQILNILIPDTGVDGFSDTNFIVFPMSRTSSRYLPIKNEQNFIARKIITINNLVNQK
Ga0208644_10039087	F011844	N/A	MGQIQGSLQNVEIDVAGGSSYKNLVCLRTSSVNTTLDITTEQTNCGVLSNPAEPSMTVDFDAICEVSPSVSQVSYEDLLTAAVNKTLVSVRIQNPVVTGSSAGETYYHQFSGYISDLTLNQSTTEFINFSGSIVSSGTLDITA
Ga0208644_10039089	F004112	N/A	MIKGHQDRKMDSYKQTRLLMFTMVRLMGDSKTAPKTPESLWPLPCDEIQKPTNDEYREVFNRLSTWQK

Protein ID

Family

RBS

Sequence

Ga0208644_100390813

N/A

MPIPEHNIKAIRKGDTWTWTLEFYEDECEETPINVSDYEFKLMAKNSSGTTQFTWANADFVEGATTNSRSVTLSAVTTATYPVGEFVYDLQVTTDSGVYTWMAGYVSVENQVTS

Ga0208644_10039086

N/A

MLDCANNVRAIYVALLNGNITYNGKNVPVYGETPFSTMPQNYVIIGDINEISDNTNHSFGNDVEVTIDIFSEQYRKYELSIVDSIASQILNILIPDTGVDGFSDTNFIVFPMSRTSSRYLPIKNEQNFIARKIITINNLVNQK

Ga0208644_10039087

N/A

MGQIQGSLQNVEIDVAGGSSYKNLVCLRTSSVNTTLDITTEQTNCGVLSNPAEPSMTVDFDAICEVSPSVSQVSYEDLLTAAVNKTLVSVRIQNPVVTGSSAGETYYHQFSGYISDLTLNQSTTEFINFSGSIVSSGTLDITA

Ga0208644_10039089

N/A

MIKGHQDRKMDSYKQTRLLMFTMVRLMGDSKTAPKTPESLWPLPCDEIQKPTNDEYREVFNRLSTWQK

NMPFamsDB