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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025889 Open in IMG/M |
| Scaffold ID | Ga0208644_1003645 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11845 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (38.46%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007971 | Metagenome / Metatranscriptome | 341 | Y |
| F010762 | Metagenome | 299 | Y |
| F015082 | Metagenome / Metatranscriptome | 257 | Y |
| F021761 | Metagenome / Metatranscriptome | 217 | Y |
| F025689 | Metagenome | 200 | Y |
| F025994 | Metagenome / Metatranscriptome | 199 | Y |
| F028799 | Metagenome | 190 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208644_100364511 | F025689 | N/A | MNPLIHTMEAQFHGAANASALRELHKCGDMNGLLEYALLLAEAEASQRSQIHWLTKEAMSSRGGVQRWHIDTARELLGG |
| Ga0208644_100364515 | F010762 | GAGG | MNQTTLEAAFKEWWEASYGRPPGTHAVMTHVGFAAYMLELMELMQNELP |
| Ga0208644_100364520 | F015082 | N/A | MSESDIYWTFVTASKYAGSFYQALGNAGLAADPNNKRRILVAFPEMVATYGTASRLHRTMRSGIAA |
| Ga0208644_100364521 | F021761 | N/A | MIGNPWINRITVLVVMFAIYAAGYAGGRDQATLAHHQHPACNTNLKP |
| Ga0208644_100364523 | F028799 | N/A | MTRASITANMTAAELAAWKANNRKQVCAPVIIKAAKPARKSQRQEWQEFRNETLGMIEAAKRERHFHILPQLFQRLNTANEMLANACIA |
| Ga0208644_100364524 | F025994 | N/A | MDDRQIQHLINHAIREHELRVALWSGLLGLLLLLGTWHAIWLCK |
| Ga0208644_10036455 | F007971 | GGA | MAVKSKVGTGRVEHKPGPPKTTSIGYGQHSRPRRRGRKPLRGQGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |