Scaffold Ga0208644_1003528

Overview

Basic Information

• Taxon OID: 3300025889
• Scaffold ID: Ga0208644_1003528
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12109
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012087	Metagenome	284	Y
F016344	Metagenome / Metatranscriptome	248	Y
F062717	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_10035283	F062717	N/A	MKKLIEITKKKLGFKYDREIAQALNMTKSGFSQKISRGDFPFLEIRELLSERGLESDWLNSYEQEMDRTESPNQLLSEVQLLKEKERVITIQQSYIERLEKMIERLEEDKKKWVPTNVPELINHPHNWVNP
Ga0208644_10035284	F012087	N/A	MTDIELDEIKTDLKEIKEMMQIISKQVAADTEVAAVRALRKLEESRINQQIRQMSELAD
Ga0208644_10035287	F016344	GGA	METTTEEKLNARFKAFKQETARMGRGYWASVHRAEQRSKEIRQSYTPVHECPVCGLFRPAEHSHQCRDLRPVDPSMEEKLSRRDDVFNDATWDYEATIE