Scaffold Ga0208644_1003491

Overview

Basic Information

• Taxon OID: 3300025889
• Scaffold ID: Ga0208644_1003491
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12203
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (55.17%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011666	Metagenome	288	Y
F032652	Metagenome	179	N
F033013	Metagenome / Metatranscriptome	178	Y
F056612	Metagenome / Metatranscriptome	137	N
F087198	Metagenome	110	N
F088884	Metagenome	109	N
F091645	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_100349110	F088884	GAG	MQLFDPAMAGTYVWQVADPKSQKTSYSACKSQTPPPNAVHGHPLGKYDSDGLYWTFVPMAGEEDPNSSRSGRFSKHPLAEEEQRKAVKEKVWGRLDSFGSYKETEF
Ga0208644_100349112	F033013	N/A	MAIQLTAKASTLKTVMLQIEPDLYARIKAAAKQHNLPAAAAMRQILEQGIQEVEANA
Ga0208644_100349115	F056612	GAG	MSNFESAFDAKFSLFKVKQKKSDKAPDKTGTIELELSEAMKLAEYLTAHPGEEGYGGKTVIKLAISAWDRCSTTGTEYTSGTVWAKKPEAGVNDVPVF
Ga0208644_100349116	F091645	N/A	MDFTALFPEHVEPNRGPGISYCVAPNARMFDYELVMPGERRLRGCLRAINKKDAERILQNRHPGATRIDIGEGRKIISAPPKA
Ga0208644_100349120	F011666	N/A	MEWHPIERTQESQFSEIATAKMLEEWLKQGDIKGIYNAALLLNTMLHQQRTITKWLAGEAARNLGRPDLEDDILQNSIIQTG
Ga0208644_10034914	F087198	N/A	MDSYQRNAETLLNELAQLKYEQRAIELRIKDVQAKLTVHVAAGDMEHLAGESENTYKYDNINYVFSNGRVTYDFSDCEDVTAAAENLKELQSTAVALGRAVQKVGTPFWTVRA
Ga0208644_10034919	F032652	AGGAG	LTIVHLSRSLVDQCKLCAQQRDYNRRSSIDYSSDKTDDKGIWSFMGVLGEVALLTYFELEINWEYLSTDLGFCGVDVGDIWEVRAMSKFGNRLFLWSDEVTKSSKLAYAWSKVVVDPSSGQCTVCGWAMGYEIAMRGVHAQYDCKRSSYFLDNTLLRPHRDPKQDQTEATRLHLLYRGIEDQPLF