Scaffold Ga0208644_1003375

Overview

Basic Information

• Taxon OID: 3300025889
• Scaffold ID: Ga0208644_1003375
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12447
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001848	Metagenome / Metatranscriptome	626	Y
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F011384	Metagenome / Metatranscriptome	291	Y
F019123	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_10033751	F003066	N/A	HRKDGVLLMAKKEPVAWLYEEYDVRSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLVPGEPVEEYKGLSKYDSKRLVEANNGL
Ga0208644_100337519	F001848	GGA	VILHYIPKDQLRSHWDYVKHGLELVRQRGHTQWIVEDVYCDCYENRSMLFVGMIDNKAVGFVVLQPIGDTLHVWASWSTINDNTLFNQAFQEIQAIAKQGGKSKVTFSSQRKGWERRARLMGFTPQTWEFIL
Ga0208644_10033752	F019123	AGTAG	MDSKPLTQEEIIKIYKTAFGYGSQVITLDKVFKFARLLEQAHGVKDVH
Ga0208644_10033753	F011384	GGAG	MYTKLDDQRQAKFIISYIEANPGCSIKSIVQQCVVCRTRLKYLESQGYFTLPKWTYNNTLDKRFKNRKYVSVTVGREYGKWQEQKRY
Ga0208644_10033756	F002037	AGG	MSKIYWIFIVVLAALAIWGTEQAMGQTTTILAPDGSVTVCQVGSNGVIICV