Scaffold Ga0208644_1003319

Overview

Basic Information

• Taxon OID: 3300025889
• Scaffold ID: Ga0208644_1003319
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12556
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (68.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000645	Metagenome / Metatranscriptome	962	Y
F001322	Metagenome	722	Y
F005585	Metagenome / Metatranscriptome	395	Y
F019642	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_100331916	F019642	N/A	MAASEFAATVASVLGSIGLLIAGLRYIIKLENLPIVSRLDKMESQLELALSTKVSRSGSKKAR
Ga0208644_100331920	F005585	GAGG	MATRGTIYYAFTKSRESSVFSSETHLSWQLSLSRPNSAEWWRVQSARIRISISLDTPLFWLSQDSVHQKIGTTLSLIRNTNQRQWCDYCKSRYGQLKDGTWHLKAQVPAVWKVQSETPLRRAQVRFYCQPCANEAQNWPDGTFWSLKEQLEYAIDEFAGREKLNVELPR
Ga0208644_100331921	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKSHVLEESLIPTCDVYIVKVELYRTEADSAAWTTGLSSESKSKQYALELAETGALGRALNLAGYFAKPSGTPKKAIQTTNKALADFVADQRPNDPEPIVWDVSHIAEQFGAEVIDEVPLCANGCGPMILKQGTKEGKEYRGWVCPVPKSGHPAKWMKIGADGHWVFQK
Ga0208644_10033198	F001322	GAG	MTAWTPNYRIRINGYTVTDATLSGLSITSGRTDIYSQPVAGYANITLIETAQASIPYEINDPISVEVQDTSANWVSLFGGFLTDLSIIVQSSGVVATSQRVNIVAVGALARLSRATFTGNLPHEFDGTRIYNLLSTVLFDSWDEVPAATTWATYDATTTWANAENSGLGEIDQPGDYELHSQTDLNDTIYNIAAFTATSGLGYLYEDAQGRIGYADSTHRGEYLATNGYVDLDGNHAIGPNLSIQKRAGDVRNKITLSYGTNSSTVSATDLASAALYGQLASTVSTSLRHAADATAQAAFYLSIRAYPQFNLKQITFQIASPEIDNTDRNSLLNVFMGMPLNIVNLPDNMVNGEFQGFVEGWTWTASLGRLELTLNISPIAYSLQAFRWNSVPAVETWNTISPTLDWLNATIVA