Scaffold Ga0208644_1003233

Overview

Basic Information

• Taxon OID: 3300025889
• Scaffold ID: Ga0208644_1003233
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12740
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F026558	Metagenome	197	Y
F040626	Metagenome	161	Y
F057213	Metagenome / Metatranscriptome	136	Y
F058146	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_100323310	F002260	AGGA	MSVPFQRISNATVRDIIFYDPAAERRASQMQVDWDNYFNVGSQEILYQLEFGWWPKYCDTVFGATYYTNLPNGALISSFNPSQLIKNDQTLIRLDTFMAVKIFYESIVSDTSNVNDVDKANYDHALRRYEFEWEKALQLMNFYDLNNDAPNGPTTKLEENYVADVDYFNGDRRYF
Ga0208644_100323311	F011761	AGGAG	MAYVLNGANSEGDGFTFAIANFALRAMHESSGLVDMTTVVAPNQGNQYLVPNFAPITYQDYNPNAAPGTSTSPGTGFGAASGAAQEQNPALGQETITATPAVAATAFDVFYAWTTSFELAATLGAELGESYAEKVDQRVCAAFTTFKATPGNTNYSPTPLDGFSRPLQLGAMELAESGTTVTPAAGGTNGFSAASVLDLIRLVKQNYKLARLPGSPIIVLDSNGDAEGSVAGQTGSSLNRLLAELTGGAVSQSGGSNLSALGNELLSTGRIESVYGCQVMFTTFLTTDSRTFLSSGPFSVLVGAYFHESAIFTVLKEGLQIKMGEKPGGLQMWLTGLAYMGAGAADLRRGGAINIQQ
Ga0208644_100323312	F057213	AGGA	MLENNDIVGSDSALAEGQVGDSQNLSNDGRVNAGSIRKSTTNNILNALSSASGQQFDSVEAAIGYIARTASQKTNVGNEQPVEPRQVGSKRNVRSNESNDLREQFAKLQSDLQAKERMLRQKELDTEILRTMGDKFDNDFADYAMQKVKSNIKFGRDGSYTIVNSKGQERYGMDGNPLTIQGLVDEVAQGNPKLLKGANASSGSGLRPGNGNFAGAPMEAIPDYSRDPAAFNAWAQKRGLGKGVGLKGAKVTASVSGTSKTIL
Ga0208644_100323313	F026558	GAG	MQAQELLKKNPIYGTLYEQMLAYQYAYLGGYVFKQYVRRKRPSEDSQLYLDLIENTVAQPICRYIVDTINDVLFEPGIKRELKFCTPTGAYINPDNCEWAQLMLLDADLQNRSMNSFMENVGDLTSIFGHCWVFVDMPKIEEGNLGRPYVVSINPLQVWDWEFDYYGGKPIIKHVKICESETESHWYLKCYYLGTDTTPSYWVGYEVGKAVDKNEVREIGRGEYPAGMSIPGFIAYGRKDPRRIDVGISDIDSASDAQREYYKLECESYTSIQFAKTIIRADKGIAIPVHAGAIVRASEGQVETIPVDTGDVDKVIAKQAQILDQIEALTGLGGLRNTKNQIASGVAIIEERKQLHRLAKSKARLMETVEEMIFTYASRFMGMRWAGEVHYNTDYEAHDTNYRMALMKEAKALMPTNPIIDSLIAKEIIGMLAPPEAIPQYEEAFINTITDPQVRTLMTDDNEQVLSRDLGNQIPTREEFGERGVPAESDEASPDGDYVAYNGTGGPGVPIQDTGQSYYTQQAVAVQLTGLNSGR
Ga0208644_10032335	F040626	N/A	MALILLIDSLGKRYGMLPTEALLRANTFDLYVMDAVLTFENYQHKKAMNNGKEVVPEYSQDELMGMLNIAKEFGS
Ga0208644_10032336	F058146	AGGAG	MKLSQLTAKPQLVEVSIDDEDTVKEFGEALTFHTWDRQPMDVFMKLASADHTNVGNIIDVVRTLILDEKGKEIINKENMLPTHVLMKSIGKVTDILGK
Ga0208644_10032337	F003807	AGGAG	MTDREVWLKTNEEKLRSLIADEAKMMPMLDNMMATVKQLKAKQAFRLALLNQLLEEEVEDSNKYSGN