NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208644_1003208

Scaffold Ga0208644_1003208


Overview

Basic Information
Taxon OID3300025889 Open in IMG/M
Scaffold IDGa0208644_1003208 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12795
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (36.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010828Metagenome298N
F024767Metagenome / Metatranscriptome204Y
F029729Metagenome187Y
F047658Metagenome149N

Sequences

Protein IDFamilyRBSSequence
Ga0208644_10032081F024767N/ALVARKAITDLRNGGGTTHVEPFIFWQLVRHSGAEAVKSGLYTFVRVVNDNNYVDIQTLNS
Ga0208644_100320815F010828N/AVKDQAAIDLLSDQELYELAQKLCNCPDDLIQEVALLLLEMPEEKWQQINEGGYLRFYVVRTMMTMATSKRSSFSKLYDLHNHKKVDHEREDYDWEKENDITLLEILIEELHWYDREVLKLWLEEGSYRKVGKKVDIPYKSIGNTVNKALEQLRDNYYAIHLERIIRERIKLPLD
Ga0208644_100320817F047658AGAAGMDKNEVLLFIADRLDQITMMGQGRYSGRITRDEQKLYQEAWSYIDPKAKVCFTCGRTPQLMSVALLNYYQCQQDNALTENGDGETETASTTPRRKRRRRGSQSK
Ga0208644_100320825F029729N/AMAIFLTQNGEPDEYGLVYNDNAYVIKTTNYTPTVRFRVAILPIDYPISAAIGQVRVYPTRSNDGQYLDRAFFDPSRFLQSYVKGQVDIKGANHNGFYVSNQMHKEYYLAIQEEEKDASGVYQNGDLFISRVKSVWNGVRNEIEWLDFDYTDYIVNNTPSVTKKFLTDSPRTIRIDSDQSYHLYFIANEIGKCQYNIKAYSGYNATGTLLADGIVDNNIAVADSWDKIYFRIPVGTHDIGNIDPSLYT
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