Scaffold Ga0208644

Basic Information
Taxon OID	3300025889 Open in IMG/M
Scaffold ID	Ga0208644_1003110 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208644_1003110 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12992
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (58.82%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

12992

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (58.82%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F020001	Metagenome / Metatranscriptome	226	Y
F034542	Metagenome	174	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_10031104	F020001	N/A	MADGKTLLTIAETAELLNCSSGFVRKRIALAEANQAGGWPKSVYLNLQPNGAKSLYRVDKAALQEFLKASSTAKVETETASAACTI
Ga0208644_10031107	F034542	AGGTGG	VGKRKNSDEFGFKSLKSVKGVELPKTIRGADNTNELSSPLSFERRFRPALNTKDFSLVSEYDYASLWVRWRRGYELSMYSQEAYGGLTYSFKYYVSGTPGFGVFLPGMCFMYPTTRTDMRMHMVGVRPRDSFNFLNFGYAVLSVSDYDANTYAVRLNSNFGAPISFFAGEVLSNRFRADGTAKNYGFNNYTVTGVGINGVPATPSYAPIFNTLFLAHSNETSWSVVDADTLAVPATGPPAVGEYLTTEMRSQCTCPDFLARENFNLYEAVSRRRYPYTRPQNLDPGFYDAGPDGATRRVPAMDNPGFARTFGFIYLNEIYNIPKVTERVYSDPNLYYYQPKWCKHIYAAMWDLQRKYDQGVVTSSWLPQPNDEPMNEYYREYFDKNLQKQTDFLKREKDLVWWERYSPKKDDMPTHMMYPDMYNMMAKTLNSGGLSSQATLQAASFEMFTTSEFDPFDPASFVVNTYSGGTYENGVLVSQPTTIFDGGSYKNGAIIPPTGFPSLINGGTYV
Ga0208644_10031108	F001215	N/A	MASTSTNKSPCLIDRPFLRGARITSATTTCDPTNPNLTDLIQLVRVGDLPSEDAALVEDITIVSNEGYPDNSGRRTCDLGLYVYAPNQAAPSTSSALMIGRVEVGLSGSLRGIPQSVQLFAVNAPVPQAGDTNLLAPIQIGKGEGLYLEKGYILAIGYLGTGSAAVSGGLSPSGITVWSQGGFY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208644_1003110

Overview

Ecosystem & Geography

Associated Families

Sequences