Scaffold Ga0208644_1002401

Overview

Basic Information

• Taxon OID: 3300025889
• Scaffold ID: Ga0208644_1002401
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14983
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F038648	Metagenome / Metatranscriptome	165	N
F071018	Metagenome	122	N
F097203	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_100240111	F001964	AGG	MSRNLFAPPKFKVQINGSLGWADLKEKVVMYKTLEYPTRKEAEATARELNPGEYTQGRIRVVPVEMPEDYDVYPTPERSKP
Ga0208644_100240121	F097203	N/A	MNYPETIPAAYSADSNLERAYRLGWNHGHGIACHNVPSIGDAIDRSIDWVGLGKTVTAENIAEYHECLCYAAEINSREYSPFEFIAHEFNESDDANELWEAFESGVADSIRFDLKGYSYAELV
Ga0208644_100240127	F038648	N/A	MPVFTLPKGVEIPENLKEGEAFQTMATIVLGKGGKAEVIEIDGMAIPGYEKQSKGKKMAEQGGEDDGEMESENEAEVSGPPGFIAEVMRRGAGPMR
Ga0208644_10024019	F071018	N/A	MSYLENGATHRSMFRLMPPLHHDADPNRSQVLAHIAENMQCDMGRAIRAFNSMRHPKSKVLVFDKVHRMWKGCDWLPAHDDSKDAMILVEHRALERRVAAIDSELRKALKEIKRLNKQMADLYSDAKEMGDGTTNWFEEMKKTLEMTDENPSKTQRQQPANTIESMIAQAWR