Scaffold Ga0208644_1001217

Overview

Basic Information

• Taxon OID: 3300025889
• Scaffold ID: Ga0208644_1001217
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21905
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (27.27%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010833	Metagenome	298	Y
F011074	Metagenome	295	N
F019816	Metagenome	227	Y
F020348	Metagenome	224	N
F025481	Metagenome	201	Y
F032653	Metagenome	179	N
F033030	Metagenome / Metatranscriptome	178	N
F048948	Metagenome	147	N
F054029	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_100121714	F025481	N/A	MTHLTNYQKFQYQRYGNILLQGDSSTQNPYDPKLLPKNYDYEDDDYTFTRWVEHNAELELLKNELYED
Ga0208644_100121719	F019816	N/A	MRELLPFERQMLLAEVYHYAWYNEEAYEDLLAFIKKYENKLDKPVFFNPINNNDTETTHLESLAYGQDLDTNPGFNEVQQS
Ga0208644_100121720	F033030	N/A	MTEKKWSAGAWKKTTAKGEVINFTINDVRYSMWANAYKTEDKQPDYKIYVNDFTPENKTTYSKPKEDTEGLPF
Ga0208644_100121723	F011074	GGAG	MQGFSGERIRSLNSTIFKQNLVYLMQLVGITNPGEVKLAILEDWIISEYGYFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVMERYKKKANEIRKMIPQEREEAIPHLTDLEIIDYSYQEYKLLENRTFDRVFNPLSVFTKLNATGIKKWTKEDGAEAKKKLMEIITYKANRMDIISAKQYRDEWTEQWLKNQARAVAVALFFDLQIKNGKVSFL
Ga0208644_100121727	F020348	GGA	MEIEHINYLELHRPNYEMVQNGYVRNIDLDILKMYEHIYRKYMSPDFILTVWCSHCIFDMIKRLYEWYDAQPKPKKRK
Ga0208644_100121733	F048948	AGGA	MRKLKAIWYILTHKAYFLAVCKTGFNGDEMTTIGNYTYSMADTLINKHINDIDNFLDQQDALDEANEIINGIL
Ga0208644_100121743	F054029	N/A	MELQQIFETTKEQRAEFTHQLIERLNNGELDPLKTHLQVKALEDMLETLKASKDYKDAVLNAAVQNGKEFEYMSAKFNIREVGVKYDYTKCESPAYEEIMLDYNDASKRKKDMEDFLKKVPHSGLDIINGVTGEVTRVYPPAKSSTTSVAVSLK
Ga0208644_10012176	F010833	N/A	MKYKQLLQLVSSINVVIGNQETKVQKKLFKIYEKIKKHHEDYQAEVDILRLDNAQTDDKDCLLLDEKGNYKYSKEGIKKLTKDIDALNDKEFDFQIINVVNPEGLTEFTFLEDWVTGIEFNKQEEEEL
Ga0208644_10012178	F032653	N/A	MRLILLALLLTSCASVKKFEKRFDSTGTTKIDSVHLTFYDSVTKIIEKEQVFTKEVTIYDTIRVTKDSIIVVPKIVTKWVYQTKEKETDNSLVKKDTIAFNRTEMAQISIVDKSKVTTANNFWKALIGLIIAIVLILAYWNRLWK