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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025889 Open in IMG/M |
| Scaffold ID | Ga0208644_1000600 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 31808 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (65.12%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002564 | Metagenome / Metatranscriptome | 547 | Y |
| F002867 | Metagenome / Metatranscriptome | 524 | Y |
| F003805 | Metagenome / Metatranscriptome | 467 | Y |
| F004722 | Metagenome | 426 | Y |
| F017122 | Metagenome / Metatranscriptome | 242 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208644_10006003 | F002564 | GGAGG | MALTIAHGTNLVEYHQSTPLTAVNDSMEVHADSSEFTFAATVTGGANFTLSFETNFNGGNTWYELDTSKNINSNGSYIYFYTGKACNRIRMRVASISSGTPSIVPHIGIAYHG |
| Ga0208644_100060032 | F002867 | N/A | MSVIQTTDYGNGYTLDQLENERGELYYRACKDSICRYAEDHYIAVMYLEEMGWDPKQQAP |
| Ga0208644_100060036 | F003805 | GAGG | MRPIEHTPESSFHKAATDQWLVNLFNKQDYRGLLEAALVLNTLHQLERTKSAWAIREAADNLANQFGMDRDSA |
| Ga0208644_100060038 | F017122 | N/A | MEVVPFQEQQDPDLRLGEGRSRTSSDKAQLFELKIWLPGQGAMRDLVRAESLQQAIQFAQNRYPNCKVEVPSTAAKKPKLARAKNGPREAARRRLKLVEQKRGLSND |
| Ga0208644_100060041 | F004722 | N/A | MSRPKTGRELVLEWLNREIRAAKTADLQRAAAFLEWARDIRKGCAKQRGGARVAQANAWRKRVDDDVRW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |