Scaffold Ga0209632_10345994

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209632_10345994

Scaffold Ga0209632_10345994

Overview

Basic Information
Taxon OID	3300025886 Open in IMG/M
Scaffold ID	Ga0209632_10345994 Open in IMG/M
Source Dataset Name	Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	725
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Helgoland, sampling site Kabeltonne
Coordinates	Lat. (^o)	54.184167	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009178	Metagenome	322	Y
F013705	Metagenome	269	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209632_103459941	F009178	N/A	EGAWRICENINGYLETKVYYFYTKKDAMKNFREYKKNIINKSNA
Ga0209632_103459943	F013705	AGG	MTNKLQNKIDELIKLEELHNIKEQYKQHEKTKGLYEQIDFKPIPQEIMDQCNNEWEGE

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