Scaffold Ga0209632_10032896

Overview

Basic Information

• Taxon OID: 3300025886
• Scaffold ID: Ga0209632_10032896
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3533
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071009	Metagenome	122	N
F088798	Metagenome	109	N
F090089	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209632_100328962	F088798	N/A	MKNQIEKLWDLIVNYELATEQSLQLVTRLNGYTLETMEDVLYALTGYHSYEQFMENER
Ga0209632_100328967	F090089	GAG	MNALERSDMSVTYYLTDHNGNQIAFFYRVDNERYNTVPNILWACRQYPQFQGTASSKGEAIESFKQTLKEIKKLNVPVRSSKKCTDCDSDLHLRENESNVCDECNPLTEDL
Ga0209632_100328968	F071009	N/A	MTTDPENLPSLDDESLQALIQHYLSLKQRLTDNLRVRERLVELQDEQLKRQIEALGNYEPIGDDIKNQLNDQ