Scaffold Ga0209632_10012290

Overview

Basic Information

• Taxon OID: 3300025886
• Scaffold ID: Ga0209632_10012290
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6627
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017994	Metagenome	237	Y
F036002	Metagenome / Metatranscriptome	171	Y
F037817	Metagenome	167	Y
F080032	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209632_1001229011	F036002	N/A	MWKNLKSKEKEIDIEILQERKNPFYVINEYAQVFAGLRQGYPYFSDNVTEAKPIYNNEQFGTIRRGHLYNIERVEPQDLL
Ga0209632_1001229013	F080032	N/A	MKEKKEQKVKLKYDFPSQLCCEVYVPNLEDWFRVTPKEFRSWCGQRRMLHLEGSIKQNTSIKAEYRDYDGPTYLYDSNKKINPNKHTQNKVAFLHGKDPRESKQRRHNAY
Ga0209632_1001229017	F017994	N/A	MEFNEFIMHKTRWLNGWNKHMKLGNINFKTYMLMRGMSEEEFDVLNIKSEQKHV
Ga0209632_100122906	F037817	N/A	MFTQVLIPDSKKEMEYIVTAEINSVHPEIDLRPGPYYFIQEAKKGTGKKIQKANFKKGRFYNHEDVIVA