Scaffold Ga0209632_10010318

Overview

Basic Information

• Taxon OID: 3300025886
• Scaffold ID: Ga0209632_10010318
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7375
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007652	Metagenome / Metatranscriptome	347	Y
F011718	Metagenome	288	Y
F032994	Metagenome	178	Y
F053639	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209632_1001031811	F053639	AGG	MSLLRDTNNNLSSKRVAGYAVLSVVLFAFVGDLFEKLVINESVANTLIMSAAALLGIGTFERKH
Ga0209632_1001031812	F007652	N/A	MNKIEYPEVRTYYVCFDDERTEVKSYGWVEPNQVFETIWIFDEFTDEAQWVAELLVWGIVPDINEEGELIL
Ga0209632_1001031813	F032994	N/A	MNSIINPPVRTYWITFDGEDKVSVLSYGWTDPNQRTDTIHVWETTIDEEVWIARLLEYGIIPEIDEQGNLVL
Ga0209632_100103187	F011718	N/A	MGVIVAWKGCGDTSGKPVTTIIEKPVPTIEYVDRWRTDTVRFVSKEFVTVRDTITSEIIVNRLDTLFLVDTVSIVEAWLTEIAKYDTTLNDFQITWQNYQNRSENLKVTYTPKKTPLKWALGIHANAGLISNFKSRYIPLMGVGLQGTVKKGYYGIDYGFNGDHYIGLRFGRNIISR