Scaffold Ga0207653_10002281

Overview

Basic Information

• Taxon OID: 3300025885
• Scaffold ID: Ga0207653_10002281
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6116
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001330	Metagenome / Metatranscriptome	721	Y
F005332	Metagenome / Metatranscriptome	404	Y
F071589	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207653_100022812	F071589	N/A	MRSRVACAAPVATVVAGFVAMVACNEGLQPTPACPSGFVGICGTATVRGTLPDSTQGLFIVAYTTFPESIKALLTFQPLPPPAVLLPPPGDSTLFYTVPLPSGRFEWVLAVWQKKGTLKPDFSNADSLFREAGFYRDAGDTTSHGSGIVVVNGSATDSVDFVIDFGHMHRICTYFPPCP
Ga0207653_100022814	F001330	N/A	VLDGALILTLLLQAFQASPLNGTWELTRIFRAGPVPSTRAVPIDSTVYLRITLETHVGDWISGRLYRRYRGEPEGSKVEAGPLRGEGRFIIGVEIEKPARARARTAAWLVGDTLRFGTSLVPDADSLELKRVRPDAPYPASVLEVVTPP
Ga0207653_100022815	F005332	AGGTGG	MTRFFVTPFVVTLSFLTPLLSCGGDRTRSPTCGMAQLIGPSLIQDRLRQLPFVLTDAPRGLPGTLPVRVIGTREQSTVLVGTKGALTMEYQGAGFPAGSVSDTTTYAVLVVDDSTQRAQGVLIYESHRPPEGYPSIGAVTGQDRTIPLYGVRVDWAGVSNPKCPLLGAPAAPPSSAQ