Scaffold Ga0207653_10000621

Overview

Basic Information

• Taxon OID: 3300025885
• Scaffold ID: Ga0207653_10000621
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12287
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057231	Metagenome / Metatranscriptome	136	N
F075177	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207653_100006215	F057231	GGAGG	MIRATNAPPVHQVVLSNLCDLQARLRGDPATLVLARGPAHIDDGPVPIDDPYPVAPVDPALAERRLAQLHARLAELEREFTSVVDLQRTIDRRLRDS
Ga0207653_100006216	F075177	N/A	MRRSSLVPALFAAALLTLTACDHFAAAQATPSAQPQLTPAINDPCRVRLDPASTITVETLRAADGSCVPPSNLVIYRCDPSLDPPVAVVDVAGVRRRFLGGPYAVPVAAIPTDALSVGIAEIGRIWITRDSRRLYVEAGGRIERWLSLPADGAVSNPPTAFMLGDSILDGGQDDIVARLSDWNVTVDAVIGRGSSGGITPAESLPTIPDVVVVELGVNDVDVESFAANAQRILAAIDGAHLVVWVTAHGPQPVTDQVDRAIFTMMGSIPNGAILDWDRLVPPELLGSDGVHPTSGQEGLLGSFLVPFLQTWRDAASGRGPTRCDGDVANAVHG