Scaffold Ga0207653_10000041

Overview

Basic Information

• Taxon OID: 3300025885
• Scaffold ID: Ga0207653_10000041
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 96988
• Total Scaffold Genes: 91
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (59.34%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001832	Metagenome / Metatranscriptome	628	Y
F020525	Metagenome / Metatranscriptome	223	Y
F032229	Metagenome / Metatranscriptome	180	Y
F085454	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207653_1000004138	F032229	GGA	MRGFGRVFPIVTLAVALSGVTCAFPTDKSDKVFVTLQAPSHIVLRGQEVSVYAQAWRVIGADTQPITNVDFEFTSGSGTIARVDRECCGYATVTGVNSGTVDIIARAVSFDKAQSADLSLRVANPLEIDSIRPRDVHYGELLTVYGVGVDSLFIAQLGDIGLIKYPFSSVRDSAGVGQIKYWVPPPAHSGQLFFLGSGVFGLDTAITTVEKEDIFEPNDTIPSDINLDLGGPWPGTILAPILFTNPALAFEPVDRTLGLGEDWFHFHTTDSTQALTFFITYPSFGDTSAAATRTFLIDSLAYAYGAAGDPVEKFYGRDSVDFIGSDFSRCKGDEFQPLQAPRESTTVALKTLPSHDLHVLTFFSRTQRYGLTVAQGYFTADPRIKADAFEENDLCHYADTKQINIPTRASGLPGFSDTLNIDNPFEIDWYRINVPAPGLGDSVLFRIQSRPFVAGRDSSDIDIYVLTVPGSTGSGVTEVGASQNTGSTEDLMLGLSAGSYYVAVVDYAGVAMRYSMCIKQIPAIGIRTCNLILPGPAVPGASKARPQGSRGVPGSSRSRFLRPRARP
Ga0207653_1000004141	F001832	GGGGG	MNGRRLGGLAVGAWGVLLTAQPLNRLAAQHVSIGPQIAFGDYREVSSDLHYTGGGIGAQATVEWKKFSADVVLTKVKYKPVTGAAATTEFDASEVDVRLRYYIAGPVSGEVGFINRKADPEFEAQSVGAVTAGARMAYLLGPGVRMALHGGMMFGAKYSGGGTTAGFGALQLGLGLTVDALKGRMRLTGDYGFQRFSRETDDGSGALPAPIQQSLGRIGLAIAF
Ga0207653_1000004165	F085454	GGAGG	MRKLFGGMVLAALAMSLPATAHAQRRAAASSMGGAKHEFGVDLGLAYVKPQNVSGGIVIETPVDVRFGFVPSHGNLMWEPRVTAAISTVGGTTVYRLTPGINALLSNSPGGHRRGMYFTGGAGLVLGDLGAGSGTQVQLGAGVGWRKPYGSGAWRYELGFQWTSDNANLGPSTIAIGGRVGISLWH
Ga0207653_1000004167	F020525	GGAGG	MKRMLTVLATVAFTAAPLAAQLLGMPNWSSPKGGTGVTISGDLAMPNSDLGKGTAFGARGSIGLANITLTAGIASWKPKGASESFTSVGGQAGFRVIGGSLIPVSISLQIGASRTGAANGDSALTRLGLGGAVSVNVPTPGLSIEPYLAVNNRWYKFSGVSGTQSNIGYTLGANVGFGMLGLHLAYDSEDYGGGVKGGILGIGVHVALKAPIGM