Scaffold Ga0207653_10000005

Overview

Basic Information

• Taxon OID: 3300025885
• Scaffold ID: Ga0207653_10000005
• Source Dataset Name: Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 257928
• Total Scaffold Genes: 217
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 155 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan: Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018884	Metagenome / Metatranscriptome	232	Y
F068649	Metagenome	124	Y
F071063	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207653_10000005148	F068649	GAGG	VLVRLHFRDSLVSGSYPAVAPGDTTAPGAVVAVRYLLRDASRGFFFDTGAVQLRLEAGKIAGHIQGSGTETGIHTPTRIDYRDVPLPLVTDSTTCSFQP
Ga0207653_10000005177	F071063	GGCGG	MQFGGSSNLVSLGVLKFTSGHSAWLLDLSNSANVITATSTDNVGTTNSANQQYINLDARLGKRFYQTRHPNVVSFQTLALEGGLADQAFDVNGTHYRQTSTYGGLNGELGAAYMLAPGVSVGGTASVSAGYLSFKQNDAFTKQKGHGYYNATRVLVALGLYF
Ga0207653_1000000543	F018884	GGAG	MLNRTRLLLLGLCALALGCDALPKFQFKLQSEIQREFHVTNAMVMVLDTTDMVVMVFDDSHAAFQPKELAAFEQQVAQYAVSHYQRGKLTRVGVMVGRATRRGDRQPEPVVFLPEYHPDGSVRLALLPSARMTTTPAPSKRQ