Scaffold Ga0209534_10101780

Overview

Basic Information

• Taxon OID: 3300025880
• Scaffold ID: Ga0209534_10101780
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1633
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004856	Metagenome / Metatranscriptome	421	Y
F010532	Metagenome	302	N
F031261	Metagenome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209534_101017804	F010532	AGGAG	MNRTLYKKLEDICAREYIINKLSATKFRTFVDFLYDDIRTWDKPMNVSEIDIIHRIEEHMSYMVSSYLNKSYEGISVD
Ga0209534_101017806	F004856	AGGAGG	MNVDSDKPKYIEARYSAYLIWDLEELGIDWDEVEDWDLQRADLEITFKDGTKQNYENWQDLDIDYKHNFEEVLILDEGWDKVEGLN
Ga0209534_101017807	F031261	N/A	MMTRTKNYVMTVDKNSDNILEQLNKLQQVRQSVSLLNKHSTRKHYVKCQGRWGRNNPDYNRRTIPFCPLDKAVKWDVYIYQGGR