Scaffold Ga0209534_10088262

Overview

Basic Information

• Taxon OID: 3300025880
• Scaffold ID: Ga0209534_10088262
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1808
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021057	Metagenome / Metatranscriptome	220	Y
F024299	Metagenome / Metatranscriptome	206	Y
F069439	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209534_100882621	F024299	N/A	TRENDSVQLNIDLAAKNYVVNGRKVQSITLYADADCYGDLAVNWEEEEDSNYVHNSSMLMRDTNDTTNNTTTMGEFYWEHAFDNTLHSILSEYGFSAQAVADVCTSEWGMQDVGRASYDANCIAEEMLTAHNVVFEDA
Ga0209534_100882623	F021057	GGA	MQNLKTITKTTTTNTKSVHVDCVYSIIQNCFNNLQVLEADCTASNYFVNSANIFAQLTALYAQYASTQDYISLQSVMQVFANNITYYDESSLFTTVVANTAMQNVQLENYVYLSN
Ga0209534_100882624	F069439	AGTAG	MQKIQNTNFTIYTNKNFKNSIFIKTNLKNNLTYMCSSMQKVALCLQAHNLKNATVRILTKRFNSACAKKLAQAAVIRIANA