Scaffold Ga0209534_10052244

Overview

Basic Information

• Taxon OID: 3300025880
• Scaffold ID: Ga0209534_10052244
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2598
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008547	Metagenome / Metatranscriptome	331	Y
F010465	Metagenome	303	Y
F047385	Metagenome / Metatranscriptome	150	Y
F054687	Metagenome / Metatranscriptome	139	Y
F088798	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209534_100522441	F010465	N/A	MKDILLDPVDMTEELMFHMFNNDMNRTLDGRWLDLYVQLQHYLDFQKNIEREADE
Ga0209534_100522442	F054687	N/A	MNDNLTDPSKLETLDEPSLQTLIDHYLRVRENLPDNLRVRDRLVELQQELLSRKDVSTIEGVIRQTTDNPLK
Ga0209534_100522443	F008547	N/A	MSVTIYLTDHNGRKISFFYRIDNERYLTCPQLIWSCREYPKYQGTAESKEDFIEQCKGVIKMINRNLPACKECGLTSPKMEAQDACPECLIDE
Ga0209534_100522444	F047385	N/A	MKIQQPTDNSLYVTIGNYVYYFDDSIDGEAIVKRWRTDDEDGDVTEDIQIDGELTKSVIE
Ga0209534_100522445	F088798	N/A	MNKELEKLWDLLVNYELASESTLQLVTRLNGYNLETMEDVLYALTGYHSYDQFMENER