NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209534_10020715

Scaffold Ga0209534_10020715


Overview

Basic Information
Taxon OID3300025880 Open in IMG/M
Scaffold IDGa0209534_10020715 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4812
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003835Metagenome / Metatranscriptome466Y
F045652Metagenome / Metatranscriptome152N
F061284Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0209534_100207156F045652AGAAGGMDQFNKLIRGRGGRRAQCKHCDRQYSEQRGLKVPQEPSEYKLTKQTMMNHMYIHFGWWESKMTTIERDQQRRDLRKYYKEEQQTNNK
Ga0209534_100207157F003835N/AMKIDLKVRNTIAQLIVDMEIGESKPIRKHEMVPVIKEVNDTALISHAIRFVKNADGDVIAIKKYRKTAIEKRFETQK
Ga0209534_100207158F061284N/AMNYEDYQRFEELAFDHLLKQYGWKIHTTPKYALIDGVATKNNEVTHIVEFKSRNESLESMERFGTYLISYDKILNGIEISRVMCVPFILIVYLIKDGVVIGIELGDEYGVAVPMEIKETRTQKSIDGGEAIRRNAYIDIEKFHIL

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