Scaffold Ga0209534_10016424

Overview

Basic Information

• Taxon OID: 3300025880
• Scaffold ID: Ga0209534_10016424
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5610
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013088	Metagenome / Metatranscriptome	274	Y
F018155	Metagenome / Metatranscriptome	236	Y
F036651	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209534_1001642411	F036651	AGG	MVTLLITKGEYLMDIHLHEVGKVKPLILTKRQIRGYYKDYLTGENKVQTANEEYVVRDSLTEIAYLMGEQR
Ga0209534_1001642414	F013088	AGGAG	MDEKIKKALWISDDLHKEIKIFAIQNNMTIEAASQMVLKLGMVSYKAEKSNGSK
Ga0209534_1001642415	F018155	GGAG	MGQNSKAVAKRREELKNEKLDKQIAYYYFQKGAGSHYREIQYQSGRVVRTDFNA