Scaffold Ga0209555_10004523

Overview

Basic Information

• Taxon OID: 3300025879
• Scaffold ID: Ga0209555_10004523
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8769
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010834	Metagenome / Metatranscriptome	298	Y
F031874	Metagenome / Metatranscriptome	181	N
F046627	Metagenome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209555_1000452310	F010834	N/A	MNELTLHLKLPKTISLNALYAGKHWTFRKKIKDEYKKIVEAELARYDHHIAESMSIHIRYNTRADVDNLVLVSKFTADTLVANGWITDDNPKHYHKLTITFDKSVEKNYCQVEIRLRNAKETIHTGEVDG
Ga0209555_1000452320	F046627	N/A	MSFVKGDIGEDLWCDYIKKQGHTDIIRAPKKKFYDWDVKSIYKKEELTFEVKYDSKAYWWANRRGTPEEPNLYIEFKNTNKDEDSGIKASKAMYYIYILKRDESNTAFVFERKGMLSHLEQVTYKTVGNSATGDDNALGWIPPLHQLVTQPFFINKIVL
Ga0209555_100045233	F031874	N/A	MVKRCLSNLKEIFLYADSQPTEIMLGALNFILLLPATIIELGWVPAYQIYGMLVGGYQLFAVAHKNINMRKTASLLSFTVFSTTVTFYALEGYLNNSASHWGWVVLWLSSLSSVKRVHSEFWHRQWNNKE