Scaffold Ga0209584_10050152

Overview

Basic Information

• Taxon OID: 3300025878
• Scaffold ID: Ga0209584_10050152
• Source Dataset Name: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1480
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC28650 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: USA: Barrow Environmental Observatory site, Alaska
• Coordinates
  • Lat. (^o): 71.299
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047997	Metagenome	149	Y
F051569	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209584_100501522	F047997	GGAG	LTGNDDHVIYSDDYTRLFTYQSRQFTAGDLSLKAINGVQWNAAVPAAVIAVAVTVVTATGLWVVGFSPWWSVLLFPVPALVVYVRMAKDRAGGLTESEKLRLAWNYRYSQPRDVLGLGENTEPTDFAWDVIFWLPAAKLSAIGAPR
Ga0209584_100501523	F051569	AGGA	MTIIAQSAAVTGRSSATTTYLAGPLDQVNAWVAQWGTSLQLLGASVLAICVVLVGIKLGAKSVASQGASTGHREAIGSIVGLVIAGVLIGAALIIVPIFIGVGSNSGTTPPAPAPAATGG