Scaffold Ga0209223_10008692

Overview

Basic Information

• Taxon OID: 3300025876
• Scaffold ID: Ga0209223_10008692
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8271
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004787	Metagenome / Metatranscriptome	423	Y
F018706	Metagenome	233	Y
F022418	Metagenome / Metatranscriptome	214	Y
F026871	Metagenome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209223_1000869211	F004787	N/A	MFVLPTFSLGVVGSPTVPASVFDDTLTFPTIQVFDNESEFITQTDAPNYTIVHAKDTDKLYVWDGNYWYIYNNN
Ga0209223_1000869215	F026871	GGAG	MEVSHYMFAGLGVALSILAFFIKRNKWEIDDMKDRLRQVEISAAGQIKEVSHLNKLSEDRREDIKKLFEKMEAK
Ga0209223_1000869217	F018706	AGGAGG	MMVDRVSVLGMSGTAATFGLSTIDTFLGIAVGAVTLVYMCMKLYQEIKKK
Ga0209223_100086929	F022418	N/A	MALTLDINLSVGRATTSSGVPSPNLVILTQAGAFMQTEDGKYLEFEF