Scaffold Ga0209533_1283871

Overview

Basic Information

• Taxon OID: 3300025874
• Scaffold ID: Ga0209533_1283871
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 646
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005537	Metagenome / Metatranscriptome	397	Y
F070551	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209533_12838711	F005537	AGAAGG	MSDNNIKFMNNLDKLLHEKQGDYGHFDHTSYAMVGMMEKYLTIHNNKTVKVPLKFFGLFMIFLKCWRVMQSDKYKADSFDDINGYTELLR
Ga0209533_12838713	F070551	N/A	QVGVIFKGDDKFTGEMNYPEAGGQKGLIGWLNDAGTILSGYKNEYKPKQPKAESKEIPF