Scaffold Ga0209533_1258085

Overview

Basic Information

• Taxon OID: 3300025874
• Scaffold ID: Ga0209533_1258085
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 694
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036488	Metagenome / Metatranscriptome	170	Y
F065938	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209533_12580851	F065938	AGGAG	MYKKDQHYNKKISTENLYKELDTHYNGETDLVRNLMSTAITEGLVETRHELSCANEELW
Ga0209533_12580853	F036488	N/A	KLKIRYTNADGFKVFNDIEYNGEAYYLEEDSTGKSSSFYVNRGDSIDG