NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209533_1106447

Scaffold Ga0209533_1106447


Overview

Basic Information
Taxon OID3300025874 Open in IMG/M
Scaffold IDGa0209533_1106447 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1367
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005012Metagenome / Metatranscriptome415Y
F007392Metagenome / Metatranscriptome352Y

Sequences

Protein IDFamilyRBSSequence
Ga0209533_11064472F007392N/AMKVLLLLPMFFCSLVFSEDFNLICEGERKVRNLSGKEFNVTSFESVLLKINNNAMEYIGVNSGRSYFFSNREYTAPKRPPHEDIKITEQYEYTPKIIKASQTIADTGDSEESSINLFSLDVNLLTGELNETEITRNIKTSVKSMSNNFQALCKREDRAY
Ga0209533_11064473F005012GAGGMKPVLILLLLFPSLSFSDNFELLCKGEETKYLDGDPSSKEVTTKVIGIQLYEEGMRLDGEWFDNKSDLTEDYSLARSYAKSKDNITGVRNFSTNALIEDREIQTIKIDKVEINILANEIFWMHEFNRVDKTNSQLNTIYAFRKSFKGACK
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