Basic Information | |
---|---|
Taxon OID | 3300025874 Open in IMG/M |
Scaffold ID | Ga0209533_1056080 Open in IMG/M |
Source Dataset Name | Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2250 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Helgoland, sampling site Kabeltonne | |||||||
Coordinates | Lat. (o) | 54.184167 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F067405 | Metagenome | 125 | N |
F072424 | Metagenome | 121 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209533_10560801 | F072424 | N/A | MSAQVKKVLAPLKPVANVVKSSSHLLTTLLFCVIAFSMLPLNLVMRSNIQKQVMSRVNSVLTTSVGQVFLFLLFVCLYMNADVENMVLLLYVLWLT |
Ga0209533_10560803 | F067405 | N/A | MSEGFLDLKILVKEMIEGKIQINKPLVITSSDRTNSEGISFLSHVLKYNNVKKNTMFVFLNEILDVFNKQISKLRGNSNVQKYIDNVKNEWDDLSDILFKEIFEEEQVKLMESLIENINELCRRFKEINTSIESNHVTDIVEEEDLVERMDTFVKSLQEFNKNTEEMTSELNRYESNLNKSNTCLLLDLSMKNKQLYLEFNDINEDKNIPENIQNVFLNYLLILNLIKKQILYYKKTIKKVEDIVSNMKKHTVSRKMTVKSQDELFMIQEQEKGIESYLSNLID |
⦗Top⦘ |