NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209533_1009512

Scaffold Ga0209533_1009512


Overview

Basic Information
Taxon OID3300025874 Open in IMG/M
Scaffold IDGa0209533_1009512 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7727
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (32.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060125Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0209533_10095127F060125N/AMVRFDSDDNGKWWEFLISWKWPHQGLTFGYDFVEPTKQYEGDMVFFSFLIYLGPLSLIYNWGNHDWNE

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