Scaffold Ga0209533_1008723

Overview

Basic Information

• Taxon OID: 3300025874
• Scaffold ID: Ga0209533_1008723
• Source Dataset Name: Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8143
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Helgoland, sampling site Kabeltonne
• Coordinates
  • Lat. (^o): 54.184167
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007366	Metagenome	352	N
F011489	Metagenome	290	N
F013089	Metagenome	274	N
F020174	Metagenome	225	Y
F030437	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209533_10087231	F007366	N/A	MRGTPLKETKLGQWFKEKSPKVFDLIGEIVPGADALKAIGALIDNTETSDEEKIEAKLLMEEIANADRANARNREIEITKSLGERDWMQVFVGSAAMIIGIVMVVWAKTGVEDKEIFFHILGFAEGTLVGQVVNYYFGSAKK
Ga0209533_100872311	F011489	AGAAG	MSSGSRKGWNSFLTKHYSKLVRIARRWTDSPSDLVHHTYLRCIDKRFPDGDNETALGYFVKAMYNEATRGKFKEIYHVTDADPKEQAFENDWTKAIQREQMQLILDRLSWFDRTIFSLYLQGWNMADVSRRSRIGESTLYRSLHITRKILKDVLRNGSKED
Ga0209533_10087234	F030437	N/A	MIHSQEENWVTGKTHTRSASAYRTSIWTPVDEYDFDKNREKYIEAGWKSYCWTKGAEGYDKYFLSKLPKDEFEHLLMVEKKYGYFTLFFHIDED
Ga0209533_10087235	F020174	N/A	MKINSYKMDEIKEDVLKYWTWAQEEFKGEDIDRLMFEVDSAITNLNRHINNEFKRKNEEGKANLRSK
Ga0209533_10087236	F013089	N/A	MGQSKIKTIQPSGTYDSQNGLMYKFEIQLESGDSGEVSAKSQDRWSVGDEVEFEVTPSKWGDRMKLTKPGFTPNQSKANNPDIQKRIDASWAIGLALKEESDPEKILEAAEFLLSIRATLISKL