Scaffold Ga0209757_10280227

Overview

Basic Information

• Taxon OID: 3300025873
• Scaffold ID: Ga0209757_10280227
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 530
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011680	Metagenome	288	Y
F072515	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_102802271	F072515	N/A	KTETIRKMIDKQIEEILSEEGVTPNWLIERYKTIADLAENDNAKLRSLDSLSKIAGLFDLAEKKSEQVTIWAGFSPEQLEGVKKHGEPELIAHAEKDKND
Ga0209757_102802272	F011680	GGAG	MENQNSSHMQKKTKTTKKKKVVDPCPICNKELHLNNEYTQRVGLLGDFDEVIGWLCPHCSSEFDVDNHIVKLFGGEGMRGEA