NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209757_10157370

Scaffold Ga0209757_10157370


Overview

Basic Information
Taxon OID3300025873 Open in IMG/M
Scaffold IDGa0209757_10157370 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)713
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011680Metagenome288Y
F072515Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209757_101573701F011680N/AMPKQPENSKKKKAADPCPICNNELYLNEEFTQRVGLLGDYNEVIGWLCPHCSSEFDVDDHLTKFLGENGMRGEA
Ga0209757_101573702F072515N/AKEILFARYMANSIAGISKIRPTDAYKMAYPEAKSEGYIKRKTDSLLKTGSVTKMIRQEIRSILNEEDVNDNWLIQRYKTIADMAESDTCKLRALDSLARISGLFDIDEKRSEQVTIWAGFSPEQLEEVKKHGNPEIIAHAETARELEKEESS

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