NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209757_10055695

Scaffold Ga0209757_10055695


Overview

Basic Information
Taxon OID3300025873 Open in IMG/M
Scaffold IDGa0209757_10055695 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1166
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000730Metagenome / Metatranscriptome917Y
F003617Metagenome / Metatranscriptome477Y
F060030Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0209757_100556951F003617N/AVLLNEGNNTAFSQTYTFLPDMTAVIYALHLNIPACVTCSNYTNGGINIGALHIKLTERSSNNRLLYENTFQSGAATLAATGTSLHWFTRDIVETIQVTKGNPIDILVELITVVTGTNTRQEGYAPVAPYLKTAVMKRFTPAGIALHLHADLSHADGVFKYKKDRVSLLGQ
Ga0209757_100556952F000730GAGLVSELIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFKQTNLSRKKAEGSVHTDSQIDDLINNAPRILNEINKQIKEQELSGVTPDQMKGLLQKKQMLELVTNNAEVINIIGKPIIKKLLGLVKSL
Ga0209757_100556953F060030N/AMVIQKLLLEEGVKRGLKASREYSVSVLGYDFIGLISRLAIFFITGFLINAYFQATIQGGIWLNSLAGFFGVKFPDTLPEWTVKLFTTGYHNIT

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.