Scaffold Ga0209757_10025994

Overview

Basic Information

• Taxon OID: 3300025873
• Scaffold ID: Ga0209757_10025994
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1648
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001594	Metagenome / Metatranscriptome	666	Y
F005148	Metagenome / Metatranscriptome	410	Y
F008755	Metagenome / Metatranscriptome	328	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_100259941	F001594	GGAG	LEKTKLTKNEYLDSLDPDNLNLEKKDLINFCHGCVDEWKNNKMGNFKFIVAMELIIAGVKITPEDVLKAVWKKILVWFWDLQFKNALAEKEGMLRRLSGLGSS
Ga0209757_100259942	F008755	GAG	MNKSRVARDLWRKVFNDNIIDLKDGDARKQVVSEFLADPVNIKAGWKKKDARFMRLGFQKVAKEQGVNVMNLGLNPTPIRSKTQKGSLNINVKSKQKNPAPMGEQIKKPEEVKGLGALPTTPQLEGQQAQATQYSAQSVGQIFNTLFNIISARTGCSPLSQNELIALGEAWSPLFNIYFTGHSLWVMPVVISAPIILSRVAEISKLKKEKEVKERYGMEDVPTKDEIKQKSNWENMSFGKNKINKK
Ga0209757_100259944	F005148	AGGAG	LKQKKYEEHLKKTLPESEEVECKNCGLKFYDEYNLICLGALDMCLLCANRNLDKDKIERAYNVKQ