Scaffold Ga0209757_10024976

Overview

Basic Information

• Taxon OID: 3300025873
• Scaffold ID: Ga0209757_10024976
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1676
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036930	Metagenome	169	Y
F046014	Metagenome	152	N
F086173	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_100249763	F086173	N/A	MLYKDKLPCDPLLHFDSKDAGTIKWTWRTKPAEAIYWKTYKPKKRDIKILSRVTPEQRKKVIKELHQDIIQTEHPPKTKQPKVRTL
Ga0209757_100249765	F046014	AGAAGG	VKDKSEKYGKLTKSEDTMIRKRVYLNKPQAEGLIQIFRRNQLLDLLVYVAINTKNKSPHYKLCIDCPIDTHPRLSNKLQDVLHTLVDRHSKALKQLEWEEYDDAETPVETLGLTPDFKEYVEDKEKEE
Ga0209757_100249767	F036930	AGGAG	MTEYTHLVEETRRQQAFREWKNKPISLHLNNGKMETKYQDGRTEIEDTSTGQKTYDFPEGYEHEDYREK