NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209757_10008291

Scaffold Ga0209757_10008291


Overview

Basic Information
Taxon OID3300025873 Open in IMG/M
Scaffold IDGa0209757_10008291 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2717
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F001922Metagenome617Y
F013646Metagenome / Metatranscriptome269N
F014859Metagenome259N

Sequences

Protein IDFamilyRBSSequence
Ga0209757_100082912F001922GGAMVIQKLLIEEGIKRGLKESQKYSVSVLGYDFIGLVSRLAVFFVMAFLINSYFVATISGGIWLNSLGGFFNMKFPSTLPQWLTQLFTTGYKGFTFWNLVTTISVLIVVVEAMQYDRMLKEKGEKPNVTSLAVFGVIALGLSLITFPTIIQKLQERRILKNV
Ga0209757_100082913F014859GAGLVNELIPPEIIPIIWFAGISLTVYFFFRKFSDVIKARITHTARKNKTVDVEETGNQIDNLINNAPRILDEVNKEIAAQREKGVTDEQMKGLLQKKQLLELGTSIPPEVYNIVAKPLMRKLIGFVGKI
Ga0209757_100082914F000704AGGTGGMPHETRDIQPSQVKSLAVYDVGSYGEDLFLPLTDVGLTETALTFSTATVTRDTSDSNQPVDTYPRVFSDTDSGLLLNEGNDTAFNQTYTLDPDMTAILYKISLNFCAVLTCSSYSNGGLNIGGLHIKITERSTNDRLLYENTFQSGAATLAATGTSMHWFTQDIVETIKINKGNPVDIQLNLITVVTGTNTRQEGYAPVAPLLKTAVMKPFFESGISLHLHPDLSHADGVFKYSKQRVSNLGQ
Ga0209757_100082915F013646N/ASGATATASEHTVGYSEFISPDFETSMPYRIAVQPTATGLGAAANAITGGGGIMQYNMPRGKGIPLANNVTITNYYTNRDARAGGADNFINFVRYSKN
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