Scaffold Ga0209757

Basic Information
Taxon OID	3300025873 Open in IMG/M
Scaffold ID	Ga0209757_10007177 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025873 Open in IMG/M

Scaffold ID

Ga0209757_10007177 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2896
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2896

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)	Depth (m)	1000
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-104.89

Alt. (m)

Depth (m)

1000

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F000730	Metagenome / Metatranscriptome	917	Y
F001606	Metagenome	664	N
F001922	Metagenome	617	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_100071771	F001606	N/A	VLYMTYGYDDVTTTSLGTAVAETQLNSGTSLSAPDPAHAFLACIPYQSESAAFTVDESLLSSLRIQSDDVAIEPKKLVLPNVNTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYGQPLVANTVAPIMGCTVIYDTESTNGAEQYYTRPSSVTAGATAVNTRTEGGTMTIQGGNEITGLYTVVSGATATASQHDVGYSEFLSPDFNTSMPYRVAIQPTYTGLGSAANAVTGGGGIMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYSRN
Ga0209757_100071772	F000704	AGGTGG	MPHTDDRLEPSKIKSVSVYNVGDYGEDLFLPFTDVGLTETAITFSTAVLTRDTDNSNQPMDDFPAVYSDTDSGVLQNEGNNTAFSQTYVFTPDMTAICYAIHLVFPAAVICSAFTSGTLNVGALHIKLTERSTNNRLLYENTFQSGAANLTATGTSLHIFQQDVVETILVRKGNPIDILVELITVTTGTNTRQEGYVTPAPYLKTAVLKRFTPAGIALHLHADLSHADGVYKYTKNRVSNLGQ
Ga0209757_100071773	F000730	N/A	MVCISTRKTGYLILVNELIPSELIPLVWFSVIAVTVYVFFRVFSSTLKEKFRQTNLSRKKAEGSGHTDSQIDDLVNNAPRILNEINKTIAEQKAQGVSDDQMQGIYNKKKMLELVTNNAEVINLIGKPIIKKLLGVVKSL
Ga0209757_100071774	F001922	N/A	MVIQKLLLEEGVKRGLKASREYSVSVLGYDFIGLVGRLIVFFLAAFLINAYFQATISGNIWLNSLGSFFGMKFPQSLPQWVTDLFTVGYHNISFWQIVQIIGIILVIVEYTQYDKKLKLQNEKPNATTTAVFAMLAIGLSLITFPTMIQKIKEMRIVNDV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209757_10007177

Overview

Ecosystem & Geography

Associated Families

Sequences