Scaffold Ga0209757_10006209

Overview

Basic Information

• Taxon OID: 3300025873
• Scaffold ID: Ga0209757_10006209
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3072
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000567	Metagenome / Metatranscriptome	1020	Y
F013896	Metagenome / Metatranscriptome	267	Y
F045144	Metagenome / Metatranscriptome	153	Y
F080498	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_100062091	F000567	N/A	MKEQLLKITQKITTWHIKLFEYLTLKSKTSIFFTWLLVFICLYEIFEHIVIPLALIWWGF
Ga0209757_100062092	F013896	GGTGG	MICDKCNGNGFTIVKGETIQCKKCLSSGELPETITPPKYLDDDLTNIYQTLYEASLKLSSDNDPGMVAASLMAIGSRIYKTILTAEDYDKMMEKIIETDVKPYKKETLQ
Ga0209757_100062093	F080498	N/A	MIKKIIIYHLLLFFVMLLFACAPRTHVAPKPIEKDNQFMTQLLRNIITQGLDF
Ga0209757_100062094	F045144	N/A	MGKTIRKYPDGKDPEKQKLFGKTRVCSKCGKRKNTLLFHWKTDYRYKNKVTKRLQRQCGVCRVKHDNDKYSASPDSYIGRRIQILRQECHKHRGRRKVQLSYDKIFKVWKKQFNKTGLTCPLSGETMTHLRGNGQVLTNISVDRIDSDKDYTKSNIQFVCLMANIMKNKYTNETLLGWSRKIVNHLGRRF